WormBase Tree Display for CDS: F58A6.6
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| F58A6.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F58A6 | |||
| Structure | Source_exons | 1 | 33 | |||
| 276 | 413 | |||||
| 464 | 649 | |||||
| 996 | 1091 | |||||
| 1141 | 1245 | |||||
| 1294 | 1388 | |||||
| 1432 | 1627 | |||||
| 2063 | 2242 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q20961 | ||
| UniProt | UniProtAcc | Q20961 | ||||
| UniProt_GCRP | UniProtAcc | Q20961 | ||||
| AlphaFold | entry | Q20961 | ||||
| NCBI_protein | GI_number | GI:351058393 | ||||
| TREEFAM | TREEFAM_ID | TF315769 | ||||
| Protein_id | CHROMOSOME_II | CCD65837 | 1 | |||
| DB_remark | SRB-16 protein; contains similarity to Pfam domain PF10292 (Serpentine type 7TM GPCR receptor class ab chemoreceptor); contains similarity to Interpro domains IPR019408 (7TM GPCR, serpentine receptor class ab (Srab)), IPR002184 (7TM GPCR, serpentine receptor class b (Srb)), IPR000344 (7TM GPCR, serpentine receptor class a (Sra)) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00019025 | ||||
| Corresponding_transcript | F58A6.6.1 | |||||
| Corresponding_protein | CE04679 | |||||
| Corresponding_PCR_product | cenix:163-d4 | |||||
| mv_F58A6.6 | ||||||
| sjj_F58A6.6 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_145442 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_93451 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_97372 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_338081 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_309902 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_357310 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3218|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_363376 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR105F6_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1161b06.5 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00015939 | |||||
| WBRNAi00033069 | ||||||
| WBRNAi00048944 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Serpentine receptor class beta-16 | Accession_evidence | UniProt | SP:Q20961 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
