WormBase Tree Display for CDS: F54C4.2
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| F54C4.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F54C4 | |||
| Structure | Source_exons | 1 | 158 | |||
| 309 | 513 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q9TZ93 | ||
| UniProt | UniProtAcc | Q9TZ93 | ||||
| UniProt_GCRP | UniProtAcc | Q9TZ93 | ||||
| AlphaFold | entry | Q9TZ93 | ||||
| NCBI_protein | GI_number | GI:351058600 | ||||
| TREEFAM | TREEFAM_ID | TF300105 | ||||
| Protein_id | CHROMOSOME_III | CCD66087 | 1 | |||
| DB_remark | SPT-4 protein; contains similarity to Pfam domain PF06093 (Spt4/RpoE2 zinc finger); contains similarity to Interpro domains IPR038510 (Spt4 superfamily), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4), IPR009287 (Transcription initiation Spt4), IPR022800 (Spt4/RpoE2 zinc finger) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00005014 | ||||
| Corresponding_transcript | F54C4.2.1 | |||||
| Corresponding_protein | CE19891 | |||||
| Corresponding_PCR_product | TH:326E11 | |||||
| cenix:326-e11 | ||||||
| mv_F54C4.2 | ||||||
| sjj_F54C4.2 | ||||||
| smd_F54C4.2 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (30) | ||||||
| RNAi_result (12) | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Transcription elongation factor SPT4 | Accession_evidence | UniProt | SP:Q9TZ93 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
