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WormBase Tree Display for CDS: CJA40315

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Name Class

CJA40315EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17130
StructureSource_exons1753
DB_infoDatabaseTREEFAMTREEFAM_IDTF330171
DB_remarkcontains similarity to Pfam domain PF00078 (Reverse transcriptase (RNA-dependent DNA polymerase)); contains similarity to Interpro domains IPR043502 (DNA/RNA polymerase superfamily), IPR000477 (Reverse transcriptase domain), IPR043128 (Reverse transcriptase/Diguanylate cyclase domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00216163
Corresponding_transcriptCJA40315.1
Corresponding_proteinJA47713
RNASeq_FPKMWBls:00000040.467059From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.271815From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.115454From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.39673From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig17130.g14034.t1[100726 mh6]
Methodcurated