Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA39884

expand all nodes | collapse all nodes | view schema

Name Class

CJA39884SMapS_parentSequenceCjap.Contig16485
StructureSource_exons1221
310442
566762
DB_infoDB_remarkCJP-NHR-121.2 protein; contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
End_not_found
VisibleGeneWBGene00215732
Corresponding_transcriptCJA39884.1
Corresponding_proteinJA64702
Corresponding_oligo_setGPL14145_CJA16783_401-460_0.886_13_C
GPL14145_CJA16783_475-534_0.658_83_B
Matching_cDNAjaponica_GG18110|c2_g2_i1Inferred_automaticallytranscript_builder.pl
japonica_GG18110|c2_g2_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16783_401-460_0.886_13_C
GPL14145_CJA16783_475-534_0.658_83_B
RNASeq_FPKMWBls:00000048.87827From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.09355From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.01113From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
5.78571From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000412.48279From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.78638From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.99734From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.06421From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
3.32553From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.74113From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.86658From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
5.5307From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig16485.g11671.t1[100726 mh6]
Methodcurated