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WormBase Tree Display for CDS: CJA36526

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Name Class

CJA36526EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17612
StructureSource_exons1477
523873
29243289
DB_infoDB_remarkcontains similarity to Pfam domain PF01424 (R3H domain); contains similarity to Interpro domains IPR001374 (R3H domain), IPR036867 (R3H domain superfamily), IPR034078 (Transcription factor NFX1 family)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00212373
Corresponding_transcriptCJA36526.1
Corresponding_proteinJA63271
Corresponding_oligo_setGPL14145_CJA01667_2184-2243_0.855_84_B
GPL14145_CJA01667_3149-3208_0.856_82_C
Matching_cDNAFF110938Inferred_automaticallytranscript_builder.pl
japonica_GG14232|c0_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA01667_2184-2243_0.855_84_B
GPL14145_CJA01667_3149-3208_0.856_82_C
RNASeq_FPKMWBls:000000427.4575From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002723.2401From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003815.5859From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
20.9233From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004123.6277From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
30.4299From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
31.6291From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
33.8059From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
56.447From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
58.9429From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
60.7458From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
72.852From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17612.g18628.t1[100726 mh6]
Methodcurated