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WormBase Tree Display for CDS: CJA33799b

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Name Class

CJA33799bSMapS_parentSequenceCjap.Contig18192
StructureSource_exons1189
269442
25862816
30473133
1165411753
1180811887
DB_infoDB_remarkcontains similarity to Pfam domain PF11095 (Gem-associated protein 7 (Gemin7)); contains similarity to Interpro domains IPR020338 (SMN complex, gem-associated protein 7), IPR037212 (Mediator complex, subunit Med7/Med21-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00209646
Corresponding_transcriptCJA33799b.1
Corresponding_proteinJA67697
Corresponding_oligo_setGPL14145_CJA01500_275-334_0.922_5_A
GPL14145_CJA01500_281-340_0.952_1_C
GPL14145_CJA01500_328-387_0.900_9_B
Microarray_resultsGPL14145_CJA01500_275-334_0.922_5_A
GPL14145_CJA01500_281-340_0.952_1_C
GPL14145_CJA01500_328-387_0.900_9_B
RNASeq_FPKMWBls:00000048e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.000518From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.000679From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.002372From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000538From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.541723From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
10.1039From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
10.1361From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
11.2633From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.25277From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.67493From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig18192.g27608.t1[100726 mh6]
Methodcurated