Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA28771c

expand all nodes | collapse all nodes | view schema

Name Class

CJA28771cSMapS_parentSequenceCjap.Contig17894
StructureSource_exons155
144441
484685
10281458
16321788
34673558
36073766
DB_infoDB_remarkCJP-ACR-5 protein; contains similarity to Pfam domain PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00184345
Corresponding_transcriptCJA28771c.1
Corresponding_proteinJA55610
Corresponding_oligo_setGPL14145_CJA11074_301-360_0.939_6_C
GPL14145_CJA11074_369-428_0.953_1_A
GPL14145_CJA11074_541-600_0.947_2_B
GPL14145_CJA22984_161-220_0.929_1_A
GPL14145_CJA28771_364-423_0.952_1_A
Microarray_resultsGPL14145_CJA11074_301-360_0.939_6_C
GPL14145_CJA11074_369-428_0.953_1_A
GPL14145_CJA11074_541-600_0.947_2_B
GPL14145_CJA22984_161-220_0.929_1_A
GPL14145_CJA28771_364-423_0.952_1_A
RNASeq_FPKMWBls:00000040.895482From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.684746From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.00016From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
0.000341From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.000241From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.012897From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.066261From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
5.8e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
7e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17894.g21383.t1[100726 mh6]
Methodcurated