Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA27635

expand all nodes | collapse all nodes | view schema

Name Class

CJA27635SMapS_parentSequenceCjap.Contig10890
StructureSource_exons1324
379771
8301296
13541512
15821899
22682402
31103424
34723709
DB_infoDB_remarkcontains similarity to Pfam domains PF01433 (Peptidase family M1 domain), PF11838 (ERAP1-like C-terminal domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR024571 (ERAP1-like C-terminal domain), IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00183208
Corresponding_transcriptCJA27635.1
Corresponding_proteinJA58509
Corresponding_oligo_setGPL14145_CJA06804_2639-2698_0.917_17_C
GPL14145_CJA06804_2797-2856_0.930_8_A
GPL14145_CJA12962_159-218_0.824_76_A
GPL14145_CJA12962_1333-1392_0.808_90_B
Microarray_resultsGPL14145_CJA06804_2639-2698_0.917_17_C
GPL14145_CJA06804_2797-2856_0.930_8_A
GPL14145_CJA12962_1333-1392_0.808_90_B
GPL14145_CJA12962_159-218_0.824_76_A
RNASeq_FPKMWBls:00000040.20521From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.226626From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.119251From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.718681From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.28827From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.765395From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.867047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.0036From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
38.4246From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
39.8717From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
41.3431From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
43.6218From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig10890.g7313.t1[100726 mh6]
Methodcurated