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WormBase Tree Display for CDS: CJA19281

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Name Class

CJA19281EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons187
154303
367522
574708
DB_infoDatabaseTREEFAMTREEFAM_IDTF315315
DB_remarkcontains similarity to Pfam domain PF01682 (DB module); contains similarity to Interpro domain IPR002602 (Domain of unknown function DB)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138485
Corresponding_transcriptCJA19281.1
Corresponding_proteinJA08172
Corresponding_oligo_setGPL14145_CJA19281_246-305_0.668_36_B
GPL14145_CJA19281_335-394_0.626_40_A
GPL14145_CJA19281_476-535_0.889_5_C
Matching_cDNAFF130101Inferred_automaticallytranscript_builder.pl
japonica_GG15382|c3_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA19281_246-305_0.668_36_B
GPL14145_CJA19281_335-394_0.626_40_A
GPL14145_CJA19281_476-535_0.889_5_C
RNASeq_FPKMWBls:0000004193.812From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002738.697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038108.972From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
123.869From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.5949From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
12.5876From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
16.0168From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
17.5434From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
20.7119From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
5.34973From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
9.33671From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
9.62726From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18202.g28117.t1[100726 mh6]
Methodcurated