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WormBase Tree Display for CDS: CJA18862

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Name Class

CJA18862EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons (12)
DB_infoDatabaseTREEFAMTREEFAM_IDTF315217
DB_remarkCJP-SLC-30A5 protein; contains similarity to Pfam domain PF01545 (Cation efflux family); contains similarity to Interpro domains IPR027469 (Cation efflux transmembrane domain superfamily), IPR002524 (Cation efflux protein)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138067
Corresponding_transcriptCJA18862.1
Corresponding_proteinJA66239
Corresponding_oligo_setGPL14145_CJA18862_1551-1610_0.783_108_C
GPL14145_CJA18862_1894-1953_0.873_36_B
GPL14145_CJA18862_2211-2270_0.957_1_A
Matching_cDNAjaponica_GG15369|c5_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA18862_1551-1610_0.783_108_C
GPL14145_CJA18862_1894-1953_0.873_36_B
GPL14145_CJA18862_2211-2270_0.957_1_A
RNASeq_FPKMWBls:000000424.7936From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002718.3639From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003816.2838From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
22.7407From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004111.978From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
13.1593From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
26.2869From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
27.6562From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
28.4324From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
28.591From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
29.2442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
29.5209From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18202.g28148.t1[100726 mh6]
Methodcurated