WormBase Tree Display for CDS: CJA18307

CJA18307 Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig18093
  Structure: Source_exons: 1 37
      672 762
      1728 1852
      2341 2534
      2728 2859
      2957 3234
      4246 4370
      4422 4576
      4628 4747
  DB_info: Database: TREEFAM TREEFAM_ID TF315528
    DB_remark: CJP-NHR-138 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Confirmed
  Visible: Gene: WBGene00137511
    Corresponding_transcript: CJA18307.1
    Corresponding_protein: JA65052
    Corresponding_oligo_set: GPL14145_CJA21884_2-61_0.904_1_A
    Matching_cDNA: FF114690 Inferred_automatically: transcript_builder.pl
      japonica_GG10040|c2_g1_i2 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14145_CJA21884_2-61_0.904_1_A
    RNASeq_FPKM: WBls:0000004 16.2946 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 19.3242 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 4.16438 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        5.58351 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 2.30408 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        2.41714 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        2.54333 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.69974 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        2.83699 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        2.85752 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        2.86107 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        5.00994 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
    Remark: based on Augustus prediction Cjap.Contig18093.g24625.t1[100726 mh6]
  Method: curated