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WormBase Tree Display for CDS: CJA17872

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Name Class

CJA17872EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17232
StructureSource_exons155
105205
13851995
24852605
26532928
DB_infoDatabaseTREEFAMTREEFAM_IDTF313887
DB_remarkCJP-DDO-3 protein; contains similarity to Pfam domain PF01266 (FAD dependent oxidoreductase); contains similarity to Interpro domains IPR006076 (FAD dependent oxidoreductase), IPR023209 (D-amino-acid oxidase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00137075
Corresponding_transcriptCJA17872.1
Corresponding_proteinJA39661
Corresponding_oligo_setGPL14145_CJA17872_790-849_0.951_1_C
GPL14145_CJA17872_944-1003_0.927_5_A
GPL14145_CJA17872_1108-1167_0.695_76_B
Matching_cDNAFD513721Inferred_automaticallytranscript_builder.pl
FF123218Inferred_automaticallytranscript_builder.pl
japonica_GG2601|c5_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA17872_1108-1167_0.695_76_B
GPL14145_CJA17872_790-849_0.951_1_C
GPL14145_CJA17872_944-1003_0.927_5_A
RNASeq_FPKMWBls:000000439.5342From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.637442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.407791From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
0.829517From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041125.8From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
134.295From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
145.411From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
29.7663From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
57.278From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
81.7051From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
94.3864From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
95.3152From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17232.g15050.t1[100726 mh6]
Methodcurated