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WormBase Tree Display for CDS: CJA17526

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Name Class

CJA17526EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons148
97208
257348
681825
872971
10191118
15131575
18161937
20512150
21992330
DB_infoDatabaseTREEFAMTREEFAM_IDTF315298
DB_remarkcontains similarity to Pfam domain PF01764 (Lipase (class 3)); contains similarity to Interpro domains IPR002921 (Fungal lipase-like domain), IPR029058 (Alpha/Beta hydrolase fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136730
Corresponding_transcriptCJA17526.1
Corresponding_proteinJA11676
Corresponding_oligo_setGPL14145_CJA17526_742-801_0.934_5_C
GPL14145_CJA17526_833-892_0.955_2_B
GPL14145_CJA17526_951-1010_0.962_1_A
Matching_cDNAFF124337Inferred_automaticallytranscript_builder.pl
japonica_GG15381|c2_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA17526_742-801_0.934_5_C
GPL14145_CJA17526_833-892_0.955_2_B
GPL14145_CJA17526_951-1010_0.962_1_A
RNASeq_FPKMWBls:00000043.30295From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000276.82383From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.1405From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
11.4618From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.8486From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.2875From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
4.67436From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.69812From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
4.90392From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
7.72009From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7.99963From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
8.81428From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18202.g28109.t1[100726 mh6]
Methodcurated