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WormBase Tree Display for CDS: CJA17436

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Name Class

CJA17436EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig9512
StructureSource_exons195
10041107
15831640
16841756
DB_infoDB_remarkcontains similarity to Pfam domain PF00085 (Thioredoxin); contains similarity to Interpro domains IPR036249 (Thioredoxin-like superfamily), IPR013766 (Thioredoxin domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136640
Corresponding_transcriptCJA17436.1
Corresponding_proteinJA18540
Corresponding_oligo_setGPL14145_CJA17436_280-339_0.963_1_A
Matching_cDNAjaponica_GG16121|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA17436_280-339_0.963_1_A
RNASeq_FPKMWBls:00000046.74425From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002715.1177From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384.51031From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
7.7047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004110.481From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
10.9842From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
11.2573From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
13.8507From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
14.3362From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
15.3963From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
16.0137From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
9.34453From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig9512.g6412.t1[100726 mh6]
Methodcurated