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WormBase Tree Display for CDS: CJA16927a

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Name Class

CJA16927aSMapS_parentSequenceCjap.Contig17974
StructureSource_exons1124
12001423
14651816
23813271
61196165
71477326
DB_infoDB_remarkCJP-CEST-12 protein; contains similarity to Pfam domain PF00135 (Carboxylesterase family); contains similarity to Interpro domains IPR029058 (Alpha/Beta hydrolase fold), IPR002018 (Carboxylesterase, type B)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00136131
Corresponding_transcriptCJA16927a.1
Corresponding_proteinJA63695
Corresponding_oligo_setGPL14145_CJA27388_74-133_0.969_1_A
Matching_cDNAjaponica_GG12247|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG17164|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA27388_74-133_0.969_1_A
RNASeq_FPKMWBls:00000041.2419From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.41662From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384.63884From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
6.69586From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000125From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.000282From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.000331From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.315097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.360418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.51057From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.24312From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.45549From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17974.g22592.t1[100726 mh6]
Methodcurated