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WormBase Tree Display for CDS: CJA16855

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Name Class

CJA16855EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17232
StructureSource_exons1183
244898
21182731
DB_infoDatabaseTREEFAMTREEFAM_IDTF105671
DB_remarkCJP-SQV-4 protein; contains similarity to Pfam domains PF00984 (UDP-glucose/GDP-mannose dehydrogenase family, central domain), PF03720 (UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain), PF03721 (UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain); contains similarity to Interpro domains IPR001732 (UDP-glucose/GDP-mannose dehydrogenase, N-terminal), IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR014027 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal), IPR036220 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily), IPR014026 (UDP-glucose/GDP-mannose dehydrogenase, dimerisation), IPR028356 (UDP-glucose 6-dehydrogenase, eukaryotic type), IPR036291 (NAD(P)-binding domain superfamily), IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136059
Corresponding_transcriptCJA16855.1
Corresponding_proteinJA47564
Corresponding_oligo_setGPL14145_CJA16855_911-970_0.836_43_C
GPL14145_CJA16855_1327-1386_0.963_1_A
GPL14145_CJA16855_1348-1407_0.953_2_B
Microarray_resultsGPL14145_CJA16855_1327-1386_0.963_1_A
GPL14145_CJA16855_1348-1407_0.953_2_B
GPL14145_CJA16855_911-970_0.836_43_C
RNASeq_FPKMWBls:00000049.4351From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002743.3238From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003832.732From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
33.131From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041169.33From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
181.773From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
203.075From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
35.331From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
46.8947From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
47.6522From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
58.5002From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
84.866From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig17232.g15046.t1[100726 mh6]
Methodcurated