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WormBase Tree Display for CDS: CJA16844

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Name Class

CJA16844SMapS_parentSequenceCjap.Contig17400
StructureSource_exons1237
28242893
29443083
79748087
81348836
92589379
DB_infoDatabaseTREEFAMTREEFAM_IDTF315954
DB_remarkCJP-FOS-1 protein; contains similarity to Pfam domain PF00170 (bZIP transcription factor); contains similarity to Interpro domains IPR004827 (Basic-leucine zipper domain), IPR000837 (AP-1 transcription factor)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136049
Corresponding_transcriptCJA16844.1
Corresponding_proteinJA66346
Corresponding_oligo_setGPL14145_CJA16844_482-541_0.930_2_A
GPL14145_CJA16844_656-715_0.615_109_C
GPL14145_CJA16844_704-763_0.591_121_B
GPL14145_CJA19971_213-272_0.928_1_A
GPL14145_CJA20481_62-121_0.886_1_A
Matching_cDNAjaponica_GG14075|c4_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16844_482-541_0.930_2_A
GPL14145_CJA16844_656-715_0.615_109_C
GPL14145_CJA16844_704-763_0.591_121_B
GPL14145_CJA19971_213-272_0.928_1_A
GPL14145_CJA20481_62-121_0.886_1_A
RNASeq_FPKMWBls:000000455.8155From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002740.3548From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003817.6665From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
21.1806From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.896From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
12.8461From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
13.6033From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
16.1424From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
32.2952From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
35.2531From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
40.6326From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
40.9425From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17400.g16334.t1[100726 mh6]
Methodcurated