Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA15984

expand all nodes | collapse all nodes | view schema

Name Class

CJA15984EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig16281
StructureSource_exons128
75295
12201393
14441583
16431904
19782505
37863961
40974340
DB_infoDatabaseTREEFAMTREEFAM_IDTF313242
DB_remarkCJP-UNC-18 protein; contains similarity to Pfam domain PF00995 (Sec1 family); contains similarity to Interpro domains IPR043154 (Sec1-like, domain 1), IPR036045 (Sec1-like superfamily), IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2), IPR043127 (Sec1-like, domain 3a)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00135188
Corresponding_transcriptCJA15984.1
Corresponding_proteinJA17753
Corresponding_oligo_setGPL14145_CJA15984_1281-1340_0.935_2_C
GPL14145_CJA15984_1430-1489_0.704_146_B
GPL14145_CJA15984_1557-1616_0.938_1_A
Matching_cDNAFF119718Inferred_automaticallytranscript_builder.pl
japonica_GG8664|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA15984_1281-1340_0.935_2_C
GPL14145_CJA15984_1430-1489_0.704_146_B
GPL14145_CJA15984_1557-1616_0.938_1_A
RNASeq_FPKMWBls:000000482.3199From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002766.8904From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003856.7256From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
66.2012From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004140.9478From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
41.5919From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
42.1087From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
44.8096From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
48.7668From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
54.1611From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
56.6607From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
61.2598From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig16281.g10923.t1[100726 mh6]
Methodcurated