Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA15907

expand all nodes | collapse all nodes | view schema

Name Class

CJA15907EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17575
StructureSource_exons142
99255
306504
548692
743869
9231052
18452089
21392263
23322430
DB_infoDatabaseTREEFAMTREEFAM_IDTF300393
DB_remarkCJP-UNC-101 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR011012 (Longin-like domain superfamily), IPR028565 (Mu homology domain), IPR001392 (Clathrin adaptor, mu subunit), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00135111
Corresponding_transcriptCJA15907.1
Corresponding_proteinJA15844
Corresponding_oligo_setGPL14145_CJA15907_208-267_0.818_47_B
GPL14145_CJA15907_371-430_0.869_26_C
GPL14145_CJA15907_439-498_0.550_195_A
Matching_cDNAFF134692Inferred_automaticallytranscript_builder.pl
japonica_GG11536|c4_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA15907_208-267_0.818_47_B
GPL14145_CJA15907_371-430_0.869_26_C
GPL14145_CJA15907_439-498_0.550_195_A
RNASeq_FPKMWBls:000000476.0957From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002732.3182From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003825.5318From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
26.748From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004129.2224From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
30.8081From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
31.097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
31.9831From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
36.9114From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
51.7161From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
52.0623From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
53.0229From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17575.g17851.t1[100726 mh6]
Methodcurated