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WormBase Tree Display for CDS: CJA15539

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Name Class

CJA15539SMapS_parentSequenceCjap.Contig18184
StructureSource_exons (14)
DB_infoDatabaseTREEFAMTREEFAM_IDTF320082
DB_remarkCJP-DEL-5 protein; contains similarity to Pfam domain PF00858 (Amiloride-sensitive sodium channel); contains similarity to Interpro domain IPR001873 (Epithelial sodium channel)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00134743
Corresponding_transcriptCJA15539.1
Corresponding_proteinJA40789
Corresponding_oligo_setGPL14145_CJA15539_738-797_0.851_22_C
GPL14145_CJA15539_900-959_0.723_94_B
GPL14145_CJA15539_1663-1722_0.929_2_A
Matching_cDNAjaponica_GG6396|c8_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA15539_1663-1722_0.929_2_A
GPL14145_CJA15539_738-797_0.851_22_C
GPL14145_CJA15539_900-959_0.723_94_B
RNASeq_FPKMWBls:00000041.29397From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.20054From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.0458From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
2.56084From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.758513From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.15759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.36596From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.57125From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.73689From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.49896From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.5095From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.59335From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18184.g27158.t1[100726 mh6]
Methodcurated