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WormBase Tree Display for CDS: CJA14734b

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Name Class

CJA14734bSMapS_parentSequenceCjap.Contig18202
StructureSource_exons1442
33443393
34473611
50155043
65296702
67616875
69307331
DB_infoDB_remarkCJP-HND-1.2 protein; contains similarity to Pfam domains PF00010 (Helix-loop-helix DNA-binding domain), PF01498 (Transposase); contains similarity to Interpro domains IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR002492 (Transposase, Tc1-like), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00133938
Corresponding_transcriptCJA14734b.1
Corresponding_proteinJA49992
Corresponding_oligo_setGPL14145_CJA14734_167-226_0.934_11_C
GPL14145_CJA14734_331-390_0.957_1_A
GPL14145_CJA14734_377-436_0.946_4_B
Microarray_resultsGPL14145_CJA14734_167-226_0.934_11_C
GPL14145_CJA14734_331-390_0.957_1_A
GPL14145_CJA14734_377-436_0.946_4_B
RNASeq_FPKMWBls:00000043.4e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.76332From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.373371From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.040355From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.085467From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.181309From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.322122From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.48697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.879089From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.62369From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
7e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig18202.g28163.t1[100726 mh6]
Methodcurated