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WormBase Tree Display for CDS: CJA14611b

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Name Class

CJA14611bSMapS_parentSequenceCjap.Contig17439
StructureSource_exons185
16261895
19472110
21592416
39844285
55995785
75647650
DB_infoDB_remarkCJP-NHR-4 protein; contains similarity to Pfam domains PF00105 (Zinc finger, C4 type (two domains)), PF02840 (Prp18 domain); contains similarity to Interpro domains IPR004098 (Prp18), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00133815
Corresponding_transcriptCJA14611b.1
Corresponding_proteinJA67404
Corresponding_oligo_setGPL14145_CJA14611_282-341_0.721_135_B
GPL14145_CJA14611_800-859_0.763_96_A
Microarray_resultsGPL14145_CJA14611_282-341_0.721_135_B
GPL14145_CJA14611_800-859_0.763_96_A
RNASeq_FPKMWBls:00000041.8e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.46525From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.026564From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
2.4e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000413e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
5e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17439.g16485.t1[100726 mh6]
Methodcurated