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WormBase Tree Display for CDS: CJA14203

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Name Class

CJA14203EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17684
StructureSource_exons1112
163455
7471050
11201217
DB_infoDatabaseTREEFAMTREEFAM_IDTF106429
DB_remarkcontains similarity to Pfam domain PF04729 (ASF1 like histone chaperone); contains similarity to Interpro domains IPR006818 (Histone chaperone ASF1-like), IPR036747 (Histone chaperone ASF1-like superfamily), IPR017282 (Histone deposition protein Asf1)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00133407
Corresponding_transcriptCJA14203.1
Corresponding_proteinJA09283
Corresponding_oligo_setGPL14145_CJA14203_37-96_0.878_15_C
GPL14145_CJA14203_198-257_0.864_25_B
GPL14145_CJA14203_304-363_0.861_26_A
Matching_cDNAFF133410Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA14203_198-257_0.864_25_B
GPL14145_CJA14203_304-363_0.861_26_A
GPL14145_CJA14203_37-96_0.878_15_C
RNASeq_FPKMWBls:0000004189.24From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002776.7345From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003852.8608From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
59.8432From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004123.462From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
251.561From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
27.5From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
28.3014From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
29.2228From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
316.27From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
349.309From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
371.558From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17684.g19521.t1[100726 mh6]
Methodcurated