Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA14171b

expand all nodes | collapse all nodes | view schema

Name Class

CJA14171bSMapS_parentSequenceCjap.Contig18202
StructureSource_exons126
5351675
1073210890
1094111081
1144011790
DB_infoDatabaseTREEFAMTREEFAM_IDTF316297
DB_remarkcontains similarity to Pfam domain PF00176 (SNF2-related domain); contains similarity to Interpro domains IPR000330 (SNF2, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00133375
Corresponding_transcriptCJA14171b.1
Corresponding_proteinJA63756
Corresponding_oligo_setGPL14145_CJA00607_1303-1362_0.962_1_A
GPL14145_CJA14171_895-954_0.858_53_B
Microarray_resultsGPL14145_CJA00607_1303-1362_0.962_1_A
GPL14145_CJA14171_895-954_0.858_53_B
RNASeq_FPKMWBls:00000040.003418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.003442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.004693From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.016137From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.003575From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.003627From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
24.0735From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
24.3027From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
26.3174From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
7.53041From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
8.10384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
8.45081From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18202.g28172.t1[100726 mh6]
Methodcurated