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WormBase Tree Display for CDS: CJA13691

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Name Class

CJA13691SMapS_parentSequenceCjap.Contig18202
StructureSource_exons (13)
DB_infoDatabaseTREEFAMTREEFAM_IDTF319851
DB_remarkcontains similarity to Pfam domain PF03166 (MH2 domain); contains similarity to Interpro domains IPR008984 (SMAD/FHA domain superfamily), IPR001132 (SMAD domain, Dwarfin-type), IPR017855 (SMAD-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00132895
Corresponding_transcriptCJA13691.1
Corresponding_proteinJA50115
Corresponding_oligo_setGPL14145_CJA13691_411-470_0.809_56_C
GPL14145_CJA13691_1179-1238_0.878_19_A
GPL14145_CJA13691_1249-1308_0.893_10_B
Matching_cDNAjaponica_GG15389|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA13691_1179-1238_0.878_19_A
GPL14145_CJA13691_1249-1308_0.893_10_B
GPL14145_CJA13691_411-470_0.809_56_C
RNASeq_FPKMWBls:000000411.5786From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.32205From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000387.1203From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.9704From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.745029From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.760503From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.874929From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.10854From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.41759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.5211From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.81651From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
3.71907From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig18202.g28200.t1[100726 mh6]
Methodcurated