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WormBase Tree Display for CDS: CJA11541

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Name Class

CJA11541SMapS_parentSequenceCjap.Contig18118
StructureSource_exons1103
151595
646881
9271255
DB_infoDatabaseTREEFAMTREEFAM_IDTF300817
DB_remarkCJP-LIAS-1 protein; contains similarity to Pfam domains PF04055 (Radical SAM superfamily), PF16881 (N-terminal domain of lipoyl synthase of Radical_SAM family); contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR031691 (Lipoyl synthase, N-terminal), IPR003698 (Lipoyl synthase), IPR007197 (Radical SAM), IPR006638 (Elp3/MiaA/NifB-like, radical SAM core domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00130745
Corresponding_transcriptCJA11541.1
Corresponding_proteinJA15529
Corresponding_oligo_setGPL14145_CJA11541_703-762_0.948_7_C
GPL14145_CJA11541_858-917_0.948_6_A
GPL14145_CJA11541_898-957_0.962_1_B
Microarray_resultsGPL14145_CJA11541_703-762_0.948_7_C
GPL14145_CJA11541_858-917_0.948_6_A
GPL14145_CJA11541_898-957_0.962_1_B
RNASeq_FPKMWBls:000000418.3686From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002715.0807From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003813.015From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
13.6614From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004115.5274From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
18.0272From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
24.382From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
28.9682From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
29.5859From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
29.6057From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
31.1153From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
31.5397From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18118.g25268.t1[100726 mh6]
Methodcurated