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WormBase Tree Display for CDS: CJA09121

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Name Class

CJA09121EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons172
119265
317625
678725
DB_infoDatabaseTREEFAMTREEFAM_IDTF354283
DB_remarkcontains similarity to Pfam domain PF00406 (Adenylate kinase); contains similarity to Interpro domains IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR006266 (UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00128325
Corresponding_transcriptCJA09121.1
Corresponding_proteinJA11276
Corresponding_oligo_setGPL14145_CJA09121_124-183_0.916_6_C
GPL14145_CJA09121_305-364_0.923_1_B
GPL14145_CJA09121_463-522_0.888_21_A
Matching_cDNAFD512852Inferred_automaticallytranscript_builder.pl
FF121085Inferred_automaticallytranscript_builder.pl
FF136960Inferred_automaticallytranscript_builder.pl
japonica_GG15364|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA09121_124-183_0.916_6_C
GPL14145_CJA09121_305-364_0.923_1_B
GPL14145_CJA09121_463-522_0.888_21_A
RNASeq_FPKMWBls:0000004209.049From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002783.5365From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003872.8384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
85.0761From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041115.454From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
37.9484From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
60.1731From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
73.7313From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
82.5871From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
85.5823From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
94.1355From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
99.8484From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig18202.g28125.t1[100726 mh6]
Methodcurated