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WormBase Tree Display for CDS: CJA08243a

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Name Class

CJA08243aSMapS_parentSequenceCjap.Contig18202
StructureSource_exons1255
300374
424645
709874
9221061
16061671
DB_infoDB_remarkCJP-BBS-1.1 protein; contains similarity to Pfam domain PF14779 (Ciliary BBSome complex subunit 1); contains similarity to Interpro domains IPR032728 (Bardet-Biedl syndrome 1, N-terminal), IPR028784 (Bardet-Biedl syndrome 1 protein)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00127448
Corresponding_transcriptCJA08243a.1
Corresponding_proteinJA51139
Corresponding_oligo_setGPL14145_CJA08243_639-698_0.917_9_C
GPL14145_CJA08243_773-832_0.956_1_B
Microarray_resultsGPL14145_CJA08243_639-698_0.917_9_C
GPL14145_CJA08243_773-832_0.956_1_B
RNASeq_FPKMWBls:00000045.97013From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.00015From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.000196From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.000623From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.00014From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.000157From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.13596From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.424088From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.72449From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.788792From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.9e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
7.5e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig18202.g28145.t2[100726 mh6]
Methodcurated