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WormBase Tree Display for CDS: CJA07875

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Name Class

CJA07875EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17227
StructureSource_exons170
119435
609786
21142495
57275838
DB_infoDatabaseTREEFAMTREEFAM_IDTF105674
DB_remarkCJP-PDHB-1 protein; contains similarity to Pfam domains PF02779 (Transketolase, pyrimidine binding domain), PF02780 (Transketolase, C-terminal domain); contains similarity to Interpro domains IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR009014 (Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II), IPR033248 (Transketolase, C-terminal domain), IPR029061 (Thiamin diphosphate-binding fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00127079
Corresponding_transcriptCJA07875.1
Corresponding_proteinJA48923
Corresponding_oligo_setGPL14145_CJA07875_782-841_0.793_34_A
GPL14145_CJA07875_930-989_0.795_33_C
GPL14145_CJA07875_1050-1109_0.920_1_B
Matching_cDNAFF121599Inferred_automaticallytranscript_builder.pl
FF128684Inferred_automaticallytranscript_builder.pl
FF133416Inferred_automaticallytranscript_builder.pl
FF137271Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07875_1050-1109_0.920_1_B
GPL14145_CJA07875_782-841_0.793_34_A
GPL14145_CJA07875_930-989_0.795_33_C
RNASeq_FPKMWBls:000000483.2942From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027195.332From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038237.468From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
238.052From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041163.772From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
176.568From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
190.486From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
196.041From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
210.936From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
223.027From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
255.821From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
271.306From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig17227.g15020.t1[100726 mh6]
Methodcurated