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WormBase Tree Display for CDS: CJA07112

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Name Class

CJA07112EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18192
StructureSource_exons146
119244
14381532
15801804
DB_infoDatabaseTREEFAMTREEFAM_IDTF315083
DB_remarkCJP-IMMP-1 protein; contains similarity to Pfam domain PF10502 (Signal peptidase, peptidase S26); contains similarity to Interpro domains IPR036286 (LexA/Signal peptidase-like superfamily), IPR019533 (Peptidase S26), IPR000223 (Peptidase S26A, signal peptidase I)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126316
Corresponding_transcriptCJA07112.1
Corresponding_proteinJA01794
Corresponding_oligo_setGPL14145_CJA07112_288-347_0.862_2_A
GPL14145_CJA07112_483-542_0.587_24_C
GPL14145_CJA07112_535-594_0.955_1_B
Matching_cDNAFF117538Inferred_automaticallytranscript_builder.pl
FF134633Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07112_288-347_0.862_2_A
GPL14145_CJA07112_483-542_0.587_24_C
GPL14145_CJA07112_535-594_0.955_1_B
RNASeq_FPKMWBls:000000413.797From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000279.69344From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000388.49928From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
9.21836From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004112.374From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
12.6083From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
13.1075From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
16.385From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
26.8282From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
29.1272From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
29.2052From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
9.58042From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18192.g27607.t1[100726 mh6]
Methodcurated