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WormBase Tree Display for CDS: CJA05603

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Name Class

CJA05603EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18212
StructureSource_exons1282
379483
14621656
17101913
19889556
96509772
1206212244
1229813275
1335113477
1372513732
DB_infoDatabaseTREEFAMTREEFAM_IDTF312803
DB_remarkCJP-KETN-1 protein; contains similarity to Pfam domains PF06582 (), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR010939 (), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00124807
Corresponding_transcriptCJA05603.1
Corresponding_proteinJA50503
Corresponding_oligo_setGPL14145_CJA05603_2397-2456_0.803_124_B
GPL14145_CJA05603_5593-5652_0.790_205_C
GPL14145_CJA05603_6400-6459_0.788_212_A
Matching_cDNAjaponica_GG4702|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG4702|c0_g1_i3Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA05603_2397-2456_0.803_124_B
GPL14145_CJA05603_5593-5652_0.790_205_C
GPL14145_CJA05603_6400-6459_0.788_212_A
RNASeq_FPKMWBls:000000418.6567From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002738.0934From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003865.4326From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
70.1413From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.0407From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
12.1434From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
25.2815From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
4.51573From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
46.8603From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
6.57141From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
8.69076From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
8.95413From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig18212.g28865.t1[100726 mh6]
Methodcurated