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WormBase Tree Display for CDS: CJA05025

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Name Class

CJA05025EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons (16)
DB_infoDatabaseTREEFAMTREEFAM_IDTF318017
DB_remarkCJP-PTR-24 protein; contains similarity to Pfam domain PF02460 (Patched family); contains similarity to Interpro domain IPR003392 (Protein patched/dispatched)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00124229
Corresponding_transcriptCJA05025.1
Corresponding_proteinJA42617
Corresponding_oligo_setGPL14145_CJA05025_1310-1369_0.882_10_B
GPL14145_CJA05025_1713-1772_0.902_2_A
GPL14145_CJA05025_2061-2120_0.800_49_C
Matching_cDNAFF118229Inferred_automaticallytranscript_builder.pl
FF127506Inferred_automaticallytranscript_builder.pl
japonica_GG15381|c3_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA05025_1310-1369_0.882_10_B
GPL14145_CJA05025_1713-1772_0.902_2_A
GPL14145_CJA05025_2061-2120_0.800_49_C
RNASeq_FPKMWBls:000000418.6333From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002729.3169From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003818.1619From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
19.3825From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004114.648From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
16.0191From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
17.2169From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
17.5278From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
17.6719From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
20.1013From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
21.0781From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
21.8613From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18202.g28110.t1[100726 mh6]
Methodcurated