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WormBase Tree Display for CDS: CJA04910

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Name Class

CJA04910SMapS_parentSequenceCjap.Contig17130
StructureSource_exons1108
155237
285674
29583159
33343834
55175615
DB_infoDatabaseTREEFAMTREEFAM_IDTF313434
DB_remarkCJP-FBXL-1 protein; contains similarity to Pfam domains PF12937 (F-box-like), PF13516 (Leucine Rich repeat); contains similarity to Interpro domains IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR001611 (Leucine-rich repeat), IPR001810 (F-box domain), IPR032675 (Leucine-rich repeat domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00124114
Corresponding_transcriptCJA04910.1
Corresponding_proteinJA61286
Corresponding_oligo_setGPL14145_CJA04910_558-617_0.867_16_C
GPL14145_CJA04910_1072-1131_0.932_2_A
GPL14145_CJA04910_1125-1184_0.940_1_B
Microarray_resultsGPL14145_CJA04910_1072-1131_0.932_2_A
GPL14145_CJA04910_1125-1184_0.940_1_B
GPL14145_CJA04910_558-617_0.867_16_C
RNASeq_FPKMWBls:00000044.87566From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002715.1049From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000388.65659From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.9379From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000414.96519From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
6.03571From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
7.09181From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7.13608From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
7.32322From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
7.39554From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
8.19055From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
8.45446From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17130.g14027.t1[100726 mh6]
Methodcurated