Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA03989

expand all nodes | collapse all nodes | view schema

Name Class

CJA03989SMapS_parentSequenceCjap.Contig17178
StructureSource_exons1187
779949
9941082
11871244
12941448
19012220
32033318
33723529
35863681
DB_infoDatabaseTREEFAMTREEFAM_IDTF321941
DB_remarkCJP-NHR-20 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00123193
Corresponding_transcriptCJA03989.1
Corresponding_proteinJA16706
Corresponding_oligo_setGPL14145_CJA03989_593-652_0.917_5_C
GPL14145_CJA03989_933-992_0.898_12_A
GPL14145_CJA03989_1220-1279_0.700_134_B
Matching_cDNAjaponica_GG842|c1_g1_i4Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03989_1220-1279_0.700_134_B
GPL14145_CJA03989_593-652_0.917_5_C
GPL14145_CJA03989_933-992_0.898_12_A
RNASeq_FPKMWBls:00000047.36485From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000276.74617From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.42103From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
4.06175From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.75517From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.76561From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.1739From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.39569From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.75493From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
6.2657From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
8.40593From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
8.86197From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17178.g14492.t1[100726 mh6]
Methodcurated