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WormBase Tree Display for CDS: CJA03572

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Name Class

CJA03572EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig5655
StructureSource_exons1143
198275
317375
433521
568915
9741164
12111481
15391640
DB_infoDB_remarkCJP-NHR-44 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00122776
Corresponding_transcriptCJA03572.1
Corresponding_proteinJA16391
Corresponding_oligo_setGPL14145_CJA03572_651-710_0.565_167_B
GPL14145_CJA03572_771-830_0.935_2_A
GPL14145_CJA03572_853-912_0.932_4_C
Matching_cDNAFF109534Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03572_651-710_0.565_167_B
GPL14145_CJA03572_771-830_0.935_2_A
GPL14145_CJA03572_853-912_0.932_4_C
RNASeq_FPKMWBls:00000043.94916From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000274.25586From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.35699From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
4.05547From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.47977From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.94032From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.25257From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.38056From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.62928From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.84338From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.0704From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.14312From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig5655.g4032.t1[100726 mh6]
Methodcurated