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WormBase Tree Display for CDS: CJA01852b

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Name Class

CJA01852bEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig4829
StructureSource_exons133
40804160
42394339
43874729
47934971
50335125
51835258
DB_infoDB_remarkCJP-STO-5 protein; contains similarity to Pfam domain PF01145 (SPFH domain / Band 7 family); contains similarity to Interpro domains IPR036013 (Band 7/SPFH domain superfamily), IPR001107 (Band 7 domain), IPR001972 (Stomatin/HflK family), IPR043202 (Band-7 stomatin-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00121056
Corresponding_transcriptCJA01852b.1
Corresponding_proteinJA48474
Corresponding_oligo_setGPL14145_CJA01852_678-737_0.910_12_C
GPL14145_CJA01852_712-771_0.820_58_B
GPL14145_CJA01852_817-876_0.874_31_A
Matching_cDNAFF115729
japonica_GG316|c0_g1_i4Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA01852_678-737_0.910_12_C
GPL14145_CJA01852_712-771_0.820_58_B
GPL14145_CJA01852_817-876_0.874_31_A
RNASeq_FPKMWBls:00000042.15104From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000274.97867From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.76078From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
1.84729From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.175446From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.190914From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.196847From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.24132From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.38873From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.467445From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.518051From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.79077From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig4829.g3466.t1[100726 mh6]
Methodcurated