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WormBase Tree Display for CDS: CJA00683

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Name Class

CJA00683EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17130
StructureSource_exons150
98284
331399
DB_infoDatabaseTREEFAMTREEFAM_IDTF313116
DB_remarkCJP-PEN-2 protein; contains similarity to Pfam domain PF10251 (Presenilin enhancer-2 subunit of gamma secretase); contains similarity to Interpro domain IPR019379 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00119887
Corresponding_transcriptCJA00683.1
Corresponding_proteinJA01117
Corresponding_oligo_setGPL14145_CJA00683_116-175_0.910_5_A
GPL14145_CJA00683_166-225_0.945_1_B
GPL14145_CJA00683_253-312_0.919_4_C
Matching_cDNAjaponica_GG19473|c4_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA00683_116-175_0.910_5_A
GPL14145_CJA00683_166-225_0.945_1_B
GPL14145_CJA00683_253-312_0.919_4_C
RNASeq_FPKMWBls:0000004299.655From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002717.4043From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003813.8174From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
5.90753From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.8306From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
10.8904From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
37.9474From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
42.8286From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
61.6387From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
64.5893From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
7.53766From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7.64113From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17130.g14011.t1[100726 mh6]
Methodcurated