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WormBase Tree Display for CDS: CJA00562

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Name Class

CJA00562EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17590
StructureSource_exons1478
11591406
DB_infoDatabaseTREEFAMTREEFAM_IDTF319262
DB_remarkCJP-NHR-162 protein; contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR042936 (Nuclear hormone receptor family member nhr-150), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00119766
Corresponding_transcriptCJA00562.1
Corresponding_proteinJA03532
Corresponding_oligo_setGPL14145_CJA00562_120-179_0.903_33_B
GPL14145_CJA00562_269-328_0.913_26_C
GPL14145_CJA00562_576-635_0.924_16_A
Matching_cDNAFD513339Inferred_automaticallytranscript_builder.pl
japonica_GG2886|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA00562_120-179_0.903_33_B
GPL14145_CJA00562_269-328_0.913_26_C
GPL14145_CJA00562_576-635_0.924_16_A
RNASeq_FPKMWBls:00000045.07175From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.97625From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.551826From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
2.56711From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.40901From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.01149From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.01683From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.12236From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.24554From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.33008From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.65766From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.28151From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig17590.g18083.t1[100726 mh6]
Methodcurated