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WormBase Tree Display for CDS: CBN25521

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Name Class

CBN25521SMapS_parentSequenceCbre_Contig18
StructureSource_exons1208
277485
5421390
DB_infoDatabaseTREEFAMTREEFAM_IDTF314476
DB_remarkCBN-SSB-1 protein; contains similarity to Pfam domains PF00076 (RNA recognition motif), PF05383 (La domain), PF08777 (RNA binding motif); contains similarity to Interpro domains IPR002344 (Lupus La protein), IPR014886 (La protein, xRRM domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR006630 (La-type HTH domain), IPR035979 (RNA-binding domain superfamily), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00164246
Corresponding_transcriptCBN25521.1
Corresponding_proteinCN18526
Corresponding_oligo_setGPL14142_CBN25521_584-643_0.888_56_B
GPL14142_CBN25521_746-805_0.919_26_C
GPL14142_CBN25521_999-1058_0.955_2_A
Matching_cDNAFF082437Inferred_automaticallytranscript_builder.pl
FF083750Inferred_automaticallytranscript_builder.pl
FF093386Inferred_automaticallytranscript_builder.pl
FF101071Inferred_automaticallytranscript_builder.pl
FF107563Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN25521_584-643_0.888_56_B
GPL14142_CBN25521_746-805_0.919_26_C
GPL14142_CBN25521_999-1058_0.955_2_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
35.4691From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
46.9221From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
47.2847From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
52.6084From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
61.3469From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
64.802From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
68.2324From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
70.191From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
192.383From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
216.452From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
243.084From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
53.2444From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
58.4235From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
67.892From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:0000038114.063From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
97.8394From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig96.brenneri.jigsaw.26.mRNA26
Methodcurated