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WormBase Tree Display for CDS: CBN16195

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Name Class

CBN16195SMapS_parentSequenceCbre_Contig0
StructureSource_exons174
527692
742924
13841519
15681709
17601879
19282012
20602208
32243341
33913525
DB_infoDatabaseTREEFAMTREEFAM_IDTF300722
DB_remarkCBN-DPY-23 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR011012 (Longin-like domain superfamily), IPR028565 (Mu homology domain), IPR001392 (Clathrin adaptor, mu subunit), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00154920
Corresponding_transcriptCBN16195.1
Corresponding_proteinCN22908
Corresponding_oligo_setGPL14142_CBN16195_509-568_0.820_60_C
GPL14142_CBN16195_592-651_0.871_30_B
GPL14142_CBN16195_942-1001_0.908_11_A
Matching_cDNAFF099297Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN16195_509-568_0.820_60_C
GPL14142_CBN16195_592-651_0.871_30_B
GPL14142_CBN16195_942-1001_0.908_11_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.0839From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
11.7249From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
12.3442From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
13.7697From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
14.212From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
19.9267From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
24.22From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
6.94349From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:000000433.4569From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
345.415From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
41.6666From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
42.5429From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
48.9343From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
53.3842From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
55.1702From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003829.6683From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
30.5902From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (14)
RemarkContig63.brenneri.jigsaw.68.mRNA68
Methodcurated