Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CBN15512

expand all nodes | collapse all nodes | view schema

Name Class

CBN15512SMapS_parentSequenceCbre_Contig11
StructureSource_exons (13)
DB_infoDatabaseTREEFAMTREEFAM_IDTF314307
DB_remarkcontains similarity to Pfam domains PF10293 (FMP27, sixth RBG unit), PF10347 (Fmp27/BLTP2/Hobbit, GFWDK motif-containg RBG unit), PF10351 (BLTP2/FMP27/Hobbit, C-terminal); contains similarity to Interpro domains IPR019441 (FMP27/BLTP2/Hobbit, GFWDK motif-containing RBG unit), IPR019443 (BLTP2/FMP27/Hobbit, C-terminal), IPR019409 (FMP27, sixth RBG unit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00154237
Corresponding_transcriptCBN15512.1
Corresponding_proteinCN11233
Corresponding_oligo_setGPL14142_CBN15512_5910-5969_0.895_18_B
GPL14142_CBN15512_6273-6332_0.937_3_A
GPL14142_CBN15512_6332-6391_0.961_1_C
Microarray_resultsGPL14142_CBN15512_5910-5969_0.895_18_B
GPL14142_CBN15512_6273-6332_0.937_3_A
GPL14142_CBN15512_6332-6391_0.961_1_C
RNASeq_FPKMWBls:00000020.196516From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0.316756From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0.394778From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
0.419691From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
0.469268From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0.710004From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0.749743From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0.775023From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
7.5401From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
6.70042From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
7.35896From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
7.78407From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
8.10291From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
8.51652From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:00000382.61731From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
3.40552From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (13)
RemarkContig7.brenneri.jigsaw.108.mRNA108
Methodcurated