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WormBase Tree Display for CDS: CBN13993

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Name Class

CBN13993SMapS_parentSequenceCbre_Contig18
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF106128
DB_remarkCBN-TRPP-8.2 protein; contains similarity to Pfam domain PF12739 (ER-Golgi trafficking TRAPP I complex 85 kDa subunit); contains similarity to Interpro domain IPR024420 (TRAPP III complex, Trs85)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00152718
Corresponding_transcriptCBN13993.1
Corresponding_proteinCN38164
Corresponding_oligo_setGPL14142_CBN13993_2070-2129_0.814_102_B
GPL14142_CBN13993_2099-2158_0.729_308_C
GPL14142_CBN13993_2244-2303_0.672_448_A
Matching_cDNAFF091795Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN13993_2070-2129_0.814_102_B
GPL14142_CBN13993_2099-2158_0.729_308_C
GPL14142_CBN13993_2244-2303_0.672_448_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
3.22138From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
4.64585From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.68361From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
5.88633From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
6.7382From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
7.15264From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
7.83379From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
9.95756From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
18.7714From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
11.7524From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
8.29828From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
8.92713From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
9.44523From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
9.86695From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:00000386.25392From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
6.83127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig160.brenneri.jigsaw.3.mRNA3
[20120409 js] changed the 5' splice site in intron 8 based on transcript alignmentsAccession_evidenceEMBLFF091795
Methodcurated