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WormBase Tree Display for CDS: CBN10431

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Name Class

CBN10431SMapS_parentSequenceCbre_Contig732
StructureSource_exons17
290634
6881253
13331836
DB_infoDatabaseTREEFAMTREEFAM_IDTF300348
DB_remarkCBN-SEC-61.A protein; contains similarity to Pfam domains PF00344 (SecY), PF10559 (Plug domain of Sec61p); contains similarity to Interpro domains IPR023201 (SecY domain superfamily), IPR002208 (SecY/SEC61-alpha family), IPR019561 (Translocon Sec61/SecY, plug domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00149156
Corresponding_transcriptCBN10431.1
Corresponding_proteinCN16966
Corresponding_oligo_setGPL14142_CBN10431_294-353_0.673_58_B
GPL14142_CBN10431_715-774_0.746_32_C
GPL14142_CBN10431_830-889_0.930_2_A
Matching_cDNAFF083578Inferred_automaticallytranscript_builder.pl
FF083586Inferred_automaticallytranscript_builder.pl
FF093458Inferred_automaticallytranscript_builder.pl
FF103559Inferred_automaticallytranscript_builder.pl
FF106055Inferred_automaticallytranscript_builder.pl
FF106212Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN10431_294-353_0.673_58_B
GPL14142_CBN10431_715-774_0.746_32_C
GPL14142_CBN10431_830-889_0.930_2_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
174.758From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
182.308From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
203.868From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
215.985From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
225.633From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
264.926From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
292.991From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
368.925From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
359.69From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
121.406From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
276.573From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
282.931From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
88.5562From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
91.5685From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:0000038559.174From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
574.036From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig1565.brenneri.jigsaw.2.mRNA2
Methodcurated