Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CBN10260

expand all nodes | collapse all nodes | view schema

Name Class

CBN10260SMapS_parentSequenceCbre_Contig28
StructureSource_exons1144
5261161
12112462
25822703
27532991
30403154
32053349
34073426
DB_infoDatabaseTREEFAMTREEFAM_IDTF312888
DB_remarkCBN-MYRF-1 protein; contains similarity to Pfam domains PF05224 (NDT80 / PhoG like DNA-binding family), PF13884 (Chaperone of endosialidase), PF13887 (Myelin regulatory factor ICA domain), PF13888 (Myelin gene regulatory factor C-terminal domain 2); contains similarity to Interpro domains IPR008967 (p53-like transcription factor, DNA-binding domain superfamily), IPR025719 (Myelin gene regulatory factor C-terminal domain 2), IPR024061 (NDT80 DNA-binding domain), IPR026932 (Myelin gene regulatory factor, ICA domain), IPR030392 (Intramolecular chaperone auto-processing domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00148985
Corresponding_transcriptCBN10260.1
Corresponding_proteinCN24223
Corresponding_oligo_setGPL14142_CBN10260_1309-1368_0.837_68_C
GPL14142_CBN10260_1853-1912_0.878_32_B
GPL14142_CBN10260_2610-2669_0.943_1_A
Microarray_resultsGPL14142_CBN10260_1309-1368_0.837_68_C
GPL14142_CBN10260_1853-1912_0.878_32_B
GPL14142_CBN10260_2610-2669_0.943_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.0178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
13.8257From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
14.7495From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
17.3907From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.7592From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
20.1045From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
21.3041From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
21.6586From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
21.6336From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
17.9723From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
22.9669From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
24.4041From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
38.1627From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
41.9054From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:0000038104.124From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
96.3965From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (13)
RemarkContig345.brenneri.jigsaw.4.mRNA4
Methodcurated