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WormBase Tree Display for CDS: CBN10086

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Name Class

CBN10086SMapS_parentSequenceCbre_Contig18
StructureSource_exons177
133441
532683
8281176
14011882
19902198
DB_infoDB_remarkCBN-SRC-1.1 protein; contains similarity to Pfam domains PF00017 (SH2 domain), PF00018 (SH3 domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036860 (SH2 domain superfamily), IPR001452 (SH3 domain), IPR036028 (SH3-like domain superfamily), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR000980 (SH2 domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00148811
Corresponding_transcriptCBN10086.1
Corresponding_proteinCN30014
Corresponding_oligo_setGPL14142_CBN04712_1041-1100_0.782_146_C
GPL14142_CBN04712_1283-1342_0.903_29_B
GPL14142_CBN04712_1447-1506_0.957_1_A
Microarray_resultsGPL14142_CBN04712_1041-1100_0.782_146_C
GPL14142_CBN04712_1283-1342_0.903_29_B
GPL14142_CBN04712_1447-1506_0.957_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
12.9924From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
13.9321From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
15.8399From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.94456From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
5.72477From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
5.79633From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
7.20277From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
7.68201From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
47.7339From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
11.2578From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
14.512From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
16.7271From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
17.0746From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
17.6857From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003812.1438From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
12.9703From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig665.brenneri.jigsaw.20.mRNA20
[20081113 db] corrected translation frame of this protein
Methodcurated