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WormBase Tree Display for CDS: CBN05548

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Name Class

CBN05548SMapS_parentSequenceCbre_Contig13
StructureSource_exons (20)
DB_infoDatabaseTREEFAMTREEFAM_IDTF316296
DB_remarkCBN-UNC-49 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
Origin (2)
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00144273
Corresponding_transcriptCBN05548.1
Corresponding_proteinCN16632
Corresponding_oligo_setGPL14142_CBN05548_1516-1575_0.726_142_C
GPL14142_CBN05548_2003-2062_0.793_73_B
GPL14142_CBN05548_2266-2325_0.891_18_A
Microarray_resultsGPL14142_CBN05548_1516-1575_0.726_142_C
GPL14142_CBN05548_2003-2062_0.793_73_B
GPL14142_CBN05548_2266-2325_0.891_18_A
RNASeq_FPKM (5)
RemarkContig119.brenneri.jigsaw.26.mRNA26
Methodcurated