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WormBase Tree Display for CDS: CBN04525

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Name Class

CBN04525SMapS_parentSequenceCbre_Contig11
StructureSource_exons1184
239384
4941663
DB_infoDatabaseTREEFAMTREEFAM_IDTF318743
DB_remarkCBN-TFG-1 protein; contains similarity to Pfam domain PF00564 (PB1 domain); contains similarity to Interpro domains IPR000270 (PB1 domain), IPR033512 (Protein TFG)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00143250
Corresponding_transcriptCBN04525.1
Corresponding_proteinCN05646
Corresponding_oligo_setGPL14142_CBN04525_1127-1186_0.530_168_C
GPL14142_CBN04525_1147-1206_0.638_90_B
GPL14142_CBN04525_944-1003_0.526_172_A
Matching_cDNAFF094690Inferred_automaticallytranscript_builder.pl
FF095187Inferred_automaticallytranscript_builder.pl
FF096819Inferred_automaticallytranscript_builder.pl
FF100148Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN04525_944-1003_0.526_172_A
GPL14142_CBN04525_1127-1186_0.530_168_C
GPL14142_CBN04525_1147-1206_0.638_90_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
26.3875From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
32.7852From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
33.5153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
37.925From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
39.2254From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
43.9582From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
44.72From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
48.8691From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
169.068From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
43.5315From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
50.6824From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
51.7357From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
57.0861From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
64.8735From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:0000038195.495From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
197.102From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig7.brenneri.jigsaw.37.mRNA37
Methodcurated