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WormBase Tree Display for CDS: CBN00124

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Name Class

CBN00124SMapS_parentSequenceCbre_Contig35
StructureSource_exons1158
260464
DB_infoDatabaseTREEFAMTREEFAM_IDTF300105
DB_remarkCBN-SPT-4 protein; contains similarity to Pfam domain PF06093 (Spt4/RpoE2 zinc finger); contains similarity to Interpro domains IPR022800 (Spt4/RpoE2 zinc finger), IPR038510 (Spt4 superfamily), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4), IPR009287 (Transcription initiation Spt4)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138849
Corresponding_transcriptCBN00124.1
Corresponding_proteinCN30689
Corresponding_oligo_setGPL14142_CBN00124_242-301_0.968_1_B
GPL14142_CBN00124_281-340_0.951_2_C
GPL14142_CBN00124_48-107_0.918_8_A
Matching_cDNAFF081482Inferred_automaticallytranscript_builder.pl
FF108515Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN00124_48-107_0.918_8_A
GPL14142_CBN00124_242-301_0.968_1_B
GPL14142_CBN00124_281-340_0.951_2_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.4385From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
18.6358From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
18.729From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
3.24007From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
34.7731From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.07053From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
5.84089From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
8.74819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
223.668From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
47.3291From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
56.8944From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
65.3588From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
65.601From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
77.4292From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003874.9305From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
79.7353From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig8.brenneri.jigsaw.106.mRNA106
[20081113 db] corrected translation frame of this protein
Methodcurated