WormBase Tree Display for CDS: C30F2.1
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| C30F2.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C30F2 | |||
| Structure | Source_exons | 1 | 153 | |||
| 279 | 741 | |||||
| 1595 | 1699 | |||||
| 1748 | 1950 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q18327 | ||
| UniProt | UniProtAcc | Q18327 | ||||
| UniProt_GCRP | UniProtAcc | Q18327 | ||||
| AlphaFold | entry | Q18327 | ||||
| NCBI_protein | GI_number | GI:3874534 | ||||
| Protein_id | CHROMOSOME_X | CAA94580 | 1 | |||
| DB_remark | COL-187 protein; contains similarity to Pfam domain PF01391 (Collagen triple helix repeat (20 copies)); contains similarity to Interpro domain IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000760 | ||||
| Corresponding_transcript | C30F2.1.1 | |||||
| Corresponding_protein | CE17480 | |||||
| Corresponding_PCR_product | cenix:57-h9 | |||||
| mv_C30F2.1 | ||||||
| sjj_C30F2.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_66618 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_63070 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_67074 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF219C2_1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR219C2_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk265h8.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_63901 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00041553 | |||||
| WBRNAi00029361 | ||||||
| WBRNAi00000966 | ||||||
| WBRNAi00011388 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Col_cuticle_N domain-containing protein | Accession_evidence | UniProt | TR:Q18327 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
