WormBase Tree Display for CDS: C01H6.1
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| C01H6.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C01H6 | |||
| Structure | Source_exons | 1 | 117 | |||
| 415 | 622 | |||||
| 669 | 1267 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q17582 | ||
| UniProt | UniProtAcc | Q17582 | ||||
| UniProt_GCRP | UniProtAcc | Q17582 | ||||
| AlphaFold | entry | Q17582 | ||||
| NCBI_protein | GI_number | GI:3873910 | ||||
| TREEFAM | TREEFAM_ID | TF316783 | ||||
| Protein_id | CHROMOSOME_I | CAA95780 | 1 | |||
| DB_remark | COL-61 protein; contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000637 | ||||
| Corresponding_transcript | C01H6.1.1 | |||||
| Corresponding_protein | CE05184 | |||||
| Corresponding_PCR_product | cenix:77-a6 | |||||
| mv_C01H6.1 | ||||||
| sjj_C01H6.1 | ||||||
| smd_C01H6.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | L3_Nanopore_Roach_71081 | |||||
| L2_Nanopore_Roach_64407 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_60502 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1714|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_117030 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_89749 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF078F1_1 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1714|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00002883 | |||||
| WBRNAi00039369 | ||||||
| WBRNAi00028316 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q17582 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
